Salmon
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Welcome to Salmon’s documentation!
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Welcome to Salmon’s documentation!
¶
Contents:
Requirements
Binary Releases
Requirements for Building from Source
Installation
Salmon
Using Salmon
Preparing transcriptome indices (mapping-based mode)
Quantifying in mapping-based mode
Quantifying in alignment-based mode
Description of important options
What’s this
LIBTYPE
?
Output
Misc
References
Alevin
Using Alevin
Providing multiple read files to Alevin
Description of important options
Output
Output Quality Check
Tutorial & Parsers
Alevin Logs
Misc
BibTex
DOI
References
Salmon Output File Formats
Quantification File
Command Information File
Auxiliary Files
Fragment Library Types
Indices and tables
¶
Index
Module Index
Search Page
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