Salmon
stable
Requirements
Installation
Salmon
Alevin
Salmon Output File Formats
Fragment Library Types
Salmon
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Welcome to Salmon’s documentation!
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Welcome to Salmon’s documentation!
¶
Contents:
Requirements
Binary Releases
Requirements for Building from Source
Installation
Salmon
Using Salmon
Preparing transcriptome indices (Quasi-index and FMD-index-based modes)
Quantifying in non-alignment-based mode
Quantifying in alignment-based mode
Description of important options
What’s this
LIBTYPE
?
Output
Misc
References
Alevin
Using Alevin
Providing multiple read files to Alevin
Description of important options
Output
Misc
References
Salmon Output File Formats
Quantification File
Command Information File
Auxiliary Files
Fragment Library Types
Indices and tables
¶
Index
Module Index
Search Page
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